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Methylation caller and differential analysis for Bisulfite-Seq.#SRS573976146199457792

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Software List
Software Version Path/Usage
bowtie2 2.3.5.1 /home/bmap/software/bowtie2/bowtie2-2.3.5.1-linux-x86_64
TrimGalore 0.6.5 /home/bmap/software/trim_galore/TrimGalore-0.6.5
Bismark 0.22.3 /home/bmap/software/bismark/Bismark-0.22.3
sra-tools 2.10.0 /home/bmap/software/sra-tools/sratoolkit.2.10.0-ubuntu64
samtools 1.10 /home/bmap/software/samtools/samtools-1.10
fastqc 0.11.8 /home/bmap/software/fastqc/FastQC
R 3.6.2 home/bmap/software/R/R-3.6.2/bin
Docker Image Information
Access File Name System Version Date
public
Methyl-seq.sif
Ubuntu 16.04 2021-03-29
This singularity file packages softwares related to bisulfite sequencing quality control, filtering, mapping, differential analysis and visualization.

Address: 800 Dong Chuan RD. Minhang District, Shanghai, China SJTU-Yale Joint Center for Biostatistics, SJTU   

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