Methylation caller and differential analysis for Bisulfite-Seq.#SRS573976146199457792
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Software List
Software |
Version |
Path/Usage |
bowtie2 |
2.3.5.1 |
/home/bmap/software/bowtie2/bowtie2-2.3.5.1-linux-x86_64 |
TrimGalore |
0.6.5 |
/home/bmap/software/trim_galore/TrimGalore-0.6.5 |
Bismark |
0.22.3 |
/home/bmap/software/bismark/Bismark-0.22.3 |
sra-tools |
2.10.0 |
/home/bmap/software/sra-tools/sratoolkit.2.10.0-ubuntu64 |
samtools |
1.10 |
/home/bmap/software/samtools/samtools-1.10 |
fastqc |
0.11.8 |
/home/bmap/software/fastqc/FastQC |
R |
3.6.2 |
home/bmap/software/R/R-3.6.2/bin |
Docker Image Information
Access |
File Name |
System |
Version |
Date |
public |
Methyl-seq.sif
|
Ubuntu
|
16.04
|
2021-03-29 |
This singularity file packages softwares related to bisulfite sequencing quality control, filtering, mapping, differential analysis and visualization.