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Singularity docker image for FVC#SRS654816942028500992

Filter false variant calls in WGS data

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Software List
Software Version Path/Usage
python 3.6.10 singularity exec *.sif python
xgboost 1.2.1 import xgboost
sklearn 0.24.1 import sklearn
pandas 1.1.4 import pandas
numpy 1.19.4 import numpy
lightgbm 3.1.1 import lightgbm
imbalanced-learn 0.8.0 import imblearn
re 2.2.1 import re
argparse 1.1 import argparse
Getopt::Long perl 5.0 use Getopt::Long
FindBin perl 5.0 use FindBin
File::Spec perl 5.0 use File::Spec
java 1.8.0_221 singularity exec *.sif java
RTG 3.10 singularity exec *.sif /home/bmap/software/RTG/rtg-core-non-commercial-3.10/rtg
GATK 4.1.9.0 singularity exec *.sif /home/bmap/software/GATK/gatk-4.1.9.0/gatk
Docker Image Information
Access File Name System Version Date
public
FVC_image.sif
Ubuntu 16.04 2021-11-07
Please see details of FVC in https://github.com/yyren/FVC

Address: 800 Dong Chuan RD. Minhang District, Shanghai, China SJTU-Yale Joint Center for Biostatistics, SJTU   

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