Singularity docker image for FVC#SRS654816942028500992
Filter false variant calls in WGS data
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Software List
Software |
Version |
Path/Usage |
python |
3.6.10 |
singularity exec *.sif python |
xgboost |
1.2.1 |
import xgboost |
sklearn |
0.24.1 |
import sklearn |
pandas |
1.1.4 |
import pandas |
numpy |
1.19.4 |
import numpy |
lightgbm |
3.1.1 |
import lightgbm |
imbalanced-learn |
0.8.0 |
import imblearn |
re |
2.2.1 |
import re |
argparse |
1.1 |
import argparse |
Getopt::Long |
perl 5.0 |
use Getopt::Long |
FindBin |
perl 5.0 |
use FindBin |
File::Spec |
perl 5.0 |
use File::Spec |
java |
1.8.0_221 |
singularity exec *.sif java |
RTG |
3.10 |
singularity exec *.sif /home/bmap/software/RTG/rtg-core-non-commercial-3.10/rtg |
GATK |
4.1.9.0 |
singularity exec *.sif /home/bmap/software/GATK/gatk-4.1.9.0/gatk |
Docker Image Information
Access |
File Name |
System |
Version |
Date |
public |
FVC_image.sif
|
Ubuntu
|
16.04
|
2021-11-07 |
Please see details of FVC in https://github.com/yyren/FVC