Singularity docker image for variant calling in FVC study#SRS578260987162144768
Genomic variant calling using GATK, Mutect2, and Varscan2 in FNVC study
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Software List
Software |
Version |
Path/Usage |
java |
1.8.0_221-b11 |
singularity exec *.sif java |
gatk |
4.0.11.0 |
singularity exec *.sif /home/bmap/software/GATK/gatk-4.0.11.0/gatk |
gatk |
4.1.9.0 |
singularity exec *.sif /home/bmap/software/GATK/gatk-4.1.9.0/gatk |
Mutect2 |
4.1.9.0 |
singularity exec *.sif /home/bmap/software/GATK/gatk-4.1.9.0/gatk Mutect2 |
Docker Image Information
Access |
File Name |
System |
Version |
Date |
public |
variant_calling_image.sif
|
Ubuntu
|
20.04
|
2021-04-10 |
Please see details of FNVC in https://github.com/yyren/FVC