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Singularity docker image for variant calling in FVC study#SRS578260987162144768

Genomic variant calling using GATK, Mutect2, and Varscan2 in FNVC study

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Software List
Software Version Path/Usage
java 1.8.0_221-b11 singularity exec *.sif java
gatk 4.0.11.0 singularity exec *.sif /home/bmap/software/GATK/gatk-4.0.11.0/gatk
gatk 4.1.9.0 singularity exec *.sif /home/bmap/software/GATK/gatk-4.1.9.0/gatk
Mutect2 4.1.9.0 singularity exec *.sif /home/bmap/software/GATK/gatk-4.1.9.0/gatk Mutect2
Docker Image Information
Access File Name System Version Date
public
variant_calling_image.sif
Ubuntu 20.04 2021-04-10
Please see details of FNVC in https://github.com/yyren/FVC

Address: 800 Dong Chuan RD. Minhang District, Shanghai, China SJTU-Yale Joint Center for Biostatistics, SJTU   

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